NCEAS Project 6680
Science Environment for Ecological Knowledge (SEEK) (Hosted by NCEAS)
- Matthew B. Jones
- James H. Beach
- Bertram Ludaescher
- William K. Michener
- Mark P. Schildhauer
| Activity | Dates | Further Information |
|---|---|---|
| Working Group | 2nd—3rd February 2003 | Participant List |
| Postdoctoral Fellow | 1st May 2003—30th April 2005 | Participant List |
| Working Group | 22nd—26th October 2003 | Participant List |
| Working Group | 23rd—28th January 2004 | Participant List |
| Working Group | 3rd—4th June 2004 | Participant List |
| Working Group | 15th—17th February 2005 | Participant List |
| Meeting | 26th—30th September 2005 | Participant List |
| Working Group | 31st July—2nd August 2006 | Participant List |
| Working Group | 11th—15th December 2006 | Participant List |
| Working Group | 6th—7th March 2007 | Participant List |
| Working Group | 4th—6th April 2007 | Participant List |
Abstract
The goals of the Science Environment for Ecological Knowledge (SEEK) are to make fundamental improvements in how researchers can 1) gain global access to ecological data and information, 2) rapidly locate and utilize distributed computational services, and 3) exercise powerful new methods for capturing, reproducing, and extending the analysis process itself. The project involves a multidisciplinary team of computer scientists, ecologists and technologists from the Partnership for Biodiversity Informatics (PBI), a consortium comprising the National Center for Ecological Analysis and Synthesis (NCEAS); the San Diego Supercomputer Center (SDSC); the University of Kansas (KU); and the University of New Mexico (UNM) and partnering institutions (Arizona State University, University of North Carolina, University of Vermont, and Napier University in Scotland).
| Type | Products of NCEAS Research |
|---|---|
| Journal Article | Altintas, Ilkay; Bhagwanani, S.; Butler, D.; Chandra, S.; Cheng, Z.; Coleman, M.; Critchlow, T.; Gupta, A.; Han, W.; Liu, L.; Ludaescher, Bertram; Pu, C.; Moore, Reagan; Shoshani, A.; Vouk, M. 2003. A modeling and execution environment for distributed scientific workflows. Proceedings of the 15th IEEE International Conference on Scientific and Statistical Database Management (SSDBM). Boston, Massachusetts. Pages 1-4. |
| Journal Article | Altintas, Ilkay; Jaeger-Frank, Efrat; Lin, Kuo-chuan; Ludaescher, Bertram; Memon, A. 2004. A web service composition and deployment framework for scientific workflows [abstract]. 2nd IEEE International Conference on Web Services (ICWS). San Diego, California. Pages 814-815. |
| Journal Article | Altintas, Ilkay; Berkley, Chad; Jaeger-Frank, Efrat; Jones, Matthew B.; Ludaescher, Bertram; Mock, S. 2004. Kepler: An extensible system for design and execution of scientific workflows. Proceedings of the 16th IEEE International Conference on Scientific and Statistical Database Management (SSDBM). IEEE Computer Society. Washington D.C.. Pages 423. |
| Journal Article | Altintas, Ilkay; Berkley, Chad; Jaeger-Frank, Efrat; Jones, Matthew B.; Ludaescher, Bertram; Mock, S. 2004. Kepler: Towards a grid enabled system for scientific workflows. Workshop on Workflow in Grid Systems, GlobalGrid Forum (GGF10). Berlin, Germany. |
| Book Chapter | Altintas, Ilkay; Birnbaum, A.; Baldridge, K.; Sudholt, W.; Miller, Mike; Amoreira, C.; Potier, Y.; Ludaescher, Bertram. 2005. A framework for the design and reuse of grid workflows. Scientific Applications on Grid Computing (SAG'04). Vol: 3458. Springer Berlin / Heidelberg. Springer. Pages 120-123. |
| Journal Article | Anderson, Robert P.; Lew, D.; Peterson, A. Townsend. 2003. Evaluating predictive models of species' distributions: Criteria for selecting optimal models. Ecological Modelling. Vol: 162. Pages 211-232. |
| Journal Article | Athanasiadis, I. N.; Villa, Ferdinando; Rizzoli, Andrea M. 2007. Enabling knowledge-based software engineering through semantic object-relational mappings. 4th European Semantic Web Conference. |
| Journal Article | Athanasiadis, I. N.; Villa, Ferdinando; Rizzoli, Andrea M. 2007. Ontologies, javabeans and relational databases for enabling semantic linking. IEEE Workshop on Development and Application of Knowledge Based Software Engineering Tools (KASET) 2007. |
| Journal Article | Balmin, A.; Papakonstantinou, Y.; Vianu, Victor. 2004. Incremental validation of xml documents. ACM Transactions on Database Systems (TODS) (Special Issue). Vol: 29(4). Pages 710-751. |
| Journal Article | Barseghian, Derik; Altintas, Ilkay; Jones, Matthew B. 2008. Accessing and using sensor data within the Kepler scientific workflow system. Edited by Gries C., Jones M.B. Proceedings of Environmental Information Management Conference 2008. Pages 26-32. |
| Journal Article | Berkley, Chad; Bowers, Shawn; Jones, Matthew B.; Ludaescher, Bertram; Schildhauer, Mark P.; Tao, Jing. 2005. Incorporating semantics in scientific workflow authoring. Proceedings of the 17th IEEE International Conference on Scientific and Statistical Database Management (SSDBM). |
| Journal Article | Berkley, Chad; Bowers, Shawn; Jones, Matthew B.; Madin, Joshua S.; Schildhauer, Mark P. 2009. Improving data discovery in metadata repositories through semantic search. Proceedings of iSEEK'2009, IEEE Computer Society. Pages 1152-1159. |
| Journal Article | Boucelma, O.; Castano, S.; Goble, C. A.; Josifovski, V.; Lacroix, Z.; Ludaescher, Bertram. 2002. Report on the EDBT'2002 panel on scientific data integration. SIGMOD Record. Vol: 31(4). Pages 107. |
| Journal Article | Bowers, Shawn; Ludaescher, Bertram. 2003. Towards a generic framework for semantic registration of scientific data. Proceedings of the Workshop on Semantic Web Technologies for Searching and Retrieving Scientific Data, CEUR Workshop Proceedings. Vol: 83. |
| Journal Article | Bowers, Shawn; Ludaescher, Bertram. 2004. An ontology-driven framework for data transformation in scientific workflows. Proceedings of the International Workshop on Data Integration in the Life Sciences. Vol: 2994. |
| Journal Article | Bowers, Shawn; Delcambre, L. 2004. Incremental navigation: Providing simple and generic access to heterogeneous structures. Proceedings of the 23rd International Conference on Conceptual Modeling (ER), LNCS. Vol: 3288. Pages 668-681. |
| Journal Article | Bowers, Shawn; Lin, Kuo-chuan; Ludaescher, Bertram. 2004. On integrating scientific resources through semantic registration. Proceedings of the 16th IEEE International Conference on Scientific and Statistical Database Management (SSDBM). |
| Journal Article | Bowers, Shawn; Ludaescher, Bertram. 2005. Actor-oriented design of scientific workflows. Proceedings of the International Conference on Conceptual Modeling (ER), LNCS. Vol: 3716. Pages 369-384. |
| Journal Article | Bowers, Shawn; Thau, Dave; Williams, Richard J.; Ludaescher, Bertram. 2005. Data procurement for enabling scientific workflows: On exploring inter-ant parasitism. Science Environment for Ecological Knowledge. Pages 57-63. |
| Journal Article | Bowers, Shawn; Ludaescher, Bertram. 2005. Towards automatic generation of semantic types in scientific workflows. Proceedings of the International Workshop on Scalable Semantic Web Knowledge Base Systems (SSWS), WISE Workshop. Vol: 3807. Pages 207-216. |
| Journal Article | Bowers, Shawn; Ludaescher, Bertram. 2006. A calculus for propagating semantic annotations through scientific workflow queries. Query Languages and Query Processing (QLQP06), EDBT Post-Conference Workshop. Vol: 4254. Munich, Germany. Pages 712-723. |
| Presentations | Bowers, Shawn; McPhillips, Timothy; Ludaescher, Bertram; Cohen, S.; Davidson, S. 2006. A model for user-oriented data provenance in pipelined scientific workflows. Provenance And Annotation Of Data, International Provenance and Annotation Workshop (IPAW'06). Vol: 4145. Chicago, Illinois. Pages 133-147. |
| Presentations | Bowers, Shawn; Ludaescher, Bertram; Ngu, A. H.; Critchlow, T. 2006. Enabling scientific workflow reuse through structured composition of dataflow and control-flow. Post-ICDE IEEE Workshop on Workflow and Data Flow for Scientific Applications (SciFlow'06). Atlanta, GA. |
| Journal Article | Bowers, Shawn; Delcambre, L. 2006. Using the uni-level description (uld) to support data-model interoperability. Data & Knowledge Engineering. Vol: 59(3). Pages 511-533. |
| Journal Article | Bowers, Shawn; McPhillips, Timothy; Wu, M.; Ludaescher, Bertram. 2007. Project histories: Managing data provenance across collection-oriented scientific workflow runs. Proceedings of the International Workshop on Data Integration in the Life Sciences. Vol: 4544. Pages 122-138. |
| Journal Article | Bowers, Shawn; Madin, Joshua S.; Schildhauer, Mark P. 2008. A conceptual modeling framework for expressing observational data semantics. Proceedings of the International Conference on Conceptual Modeling (ER), LNCS. Vol: 5231. Pages 41-55. |
| Journal Article | Bowers, Shawn; McPhillips, Timothy; Riddle, Sean; Anand, M.; Ludaescher, Bertram. 2008. Kepler/ppod: Scientific workflow and provenance support for assembling the tree of life. Proceedings of the International Provenance and Annotation Workshop, LNCS. Vol: 5272. Pages 70-78. |
| Journal Article | Bowers, Shawn; McPhillips, Timothy; Ludaescher, Bertram. 2008. Provenance in collection-oriented workflows. Concurrency and Computation-Practice & Experience. Vol: 20(5). Pages 519-529. |
| Journal Article | Brambilla, M.; Deutsch, A.; Sui, L.; Vianu, Victor. 2005. The role of visual tools in a web application design and verification framework: A visual notation for LTL formulae. 5th International Conference on Web Engineering (ICWE). Pages 557-568. |
| Journal Article | Butler, Randy; Servilla, Mark; Gage, Stuart; Basney, Jim; Welch, Von; Baker, Bill; Fleury, Terry; Duda, Patrick; Gehrig, David; Bletzinger, Michael; Tao, Jing; Freemon, D. Michael. 2007. CyberInfrastructure for the analysis of ecological acoustic sensor data: A use case study in grid deployment. Cluster Computing-The Journal of Networks Software Tools and Applications. Vol: 10(3). Springer Netherlands. |
| Journal Article | Cox, Stephen B.; Clark, Christopher M.; Cleland, Elsa E.; Suding, Katharine N.; Weiher, Evan; Pennington, Deana D. 2008. Scale-dependent responses of plant biodiversity to nitrogen enrichment. Ecology. Vol: 89(8). Pages 2165-2171. |
| Journal Article | Craig, Paul; Kennedy, Jessie. 2008. Concept relationship editor: A visual interface to support the assertion of synonymy relationships between taxonomic classifications. Proceedings of SPIE, Visualization and Data Analysis 2008. Vol: 6809. San Jose, CA. Pages 680906-680906-12. |
| Journal Article | Cushing, Judith B.; Vanderbilt, Kristin; Brunt, James W.; Jones, Matthew B.; Gupta, A.; McCartney, Peter. 2005. NSF long term ecological research sites praxis et theoria - LTER information management and CS research. Edited by Frew, J.. Proceedings of the 17th IEEE International Conference on Scientific and Statistical Database Management (SSDBM). Pages 303-306. |
| Journal Article | Davidson, S.; Boulakia, S.; Eyal, A.; Ludaescher, Bertram; McPhillips, Timothy; Bowers, Shawn; Anand, M.; Freire, Juliana. 2007. Provenance in scientific workflow systems. IEEE Data Engineering Bulletin. Vol: 30(4). Pages 44-50. |
| Journal Article | Day, Troy; Stockwell, David. In Press. A dynamic surrogate model of global landslide distribution. Earth Surface Processes and Landforms. |
| Journal Article | Deutsch, A.; Sui, L.; Vianu, Victor. 2004. Specification and verification of data-driven web services. Proceedings of the 23rd ACM SIGACT-SIGMOD-SIGART Symposium on Principles of Database Systems (PODS). Pages 71-82. |
| Journal Article | Deutsch, A.; Marcus, M.; Sui, L.; Vianu, Victor; Zhou, D. 2005. A verifier for interactive, data-driven web applications. Proceedings of the ACM SIGMOD International Conference on Management of Data. Vol: 2005. Pages 539-550. |
| Journal Article | Deutsch, A.; Ludaescher, Bertram; Nash, A. 2005. Rewriting queries using views with access patterns under integrity constraints. Edited by T. Eiter and L. Libkin International Conference on Database Theory (ICDT). Edinburgh, Scotland. Pages 352-367. |
| Journal Article | Deutsch, A.; Sui, L.; Vianu, Victor; Zhou, D. 2006. Verification of communicating, data-driven web services. Proceedings of the 25th ACM SIGACT-SIGMOD-SIGART Symposium on Principles of Database Systems (PODS). Pages 90-99. |
| Journal Article | Deutsch, A.; Ludaescher, Bertram; Nash, A. 2007. Rewriting queries using views with access patterns under integrity constraints. Theoretical Computer Science. Vol: 371(3). Pages 200-226. |
| Journal Article | Downey, Laura. 2005. Making technology work for scientists. LTER Network News. Vol: 18(1). |
| Journal Article | Downey, Laura. 2006. Designing annotation mechanisms with users in mind: A paper prototyping case study from the scientific environment for ecological knowledge (SEEK). Proceedings of the Workshop on Semantic Web User Interaction, International Semantic Web Conference. Pages 1-12. |
| Journal Article | Downey, Laura. 2007. Group usability testing: Evolution in usability techniques. Journal of Usability Studies. Vol: 2(3). Pages 133-144. |
| Journal Article | Downey, Laura; Pennington, Deana D. 2009. Bridging the gap between technology and science with examples from ecology and biodiversity. Biodiversity Informatics. Vol: 6. Pages 18-27. |
| Journal Article | Dunne, Jennifer A.; Williams, Richard J.; Martinez, Neo. 2004. Network structure and robustness of marine food webs. Marine Ecology-Progress Series. Vol: 2(3). Pages 311-312. |
| Journal Article | Franz, Nico M. 2005. On the lack of good scientific reasons for the growing phylogeny/classification gap. Cladistics. Vol: 21. Pages 495-500. |
| Journal Article | Franz, Nico M.; Peet, Robert K.; Weakley, Alan. 2007. On the use of taxonomic concepts in support of biodiversity research and taxonomy. Edited by Wheeler, Q. D. New Taxonomy. Vol: 74. Taylor & Francis. Boca Raton, FL. Pages 63-84. |
| Journal Article | Franz, Nico M.; Peet, Robert K. 2009. Towards a language for mapping relationships among taxonomic concepts. Systematics and Biodiversity. Vol: 7(1). Pages 520. |
| Journal Article | Gauch, Susan. 2002. Biodiversity information organization using taxonomy (BIOT). Proceedings of the National Conference on Digital Government Research. Pages 169-174. |
| Journal Article | Gauch, Susan; Chaffee, J.; Pretschner, A. 2003. Ontology-based user profiles for search and browsing. Web Intelligence and Agent Systems. Vol: 1(3-4). Pages 219-234. |
| Journal Article | Gauch, Susan; Trajkova, Joana. 2004. Improving ontology-based user profiles. Proceedings of RIAO 2004. France. Pages 380-389. |
| Journal Article | Gauch, Susan; Ranganathan, S.; Chandramouli, A. 2009. Training a hierarchical classifier using inter document relationships. ACM Transactions on Information Systems. Vol: 60(1). Pages 47-58. |
| Journal Article | Gauch, Susan; Chandramouli, A. In Press. Semi-automatic update of existing taxonomy using text mining. 5th International Conference on Ecological Informatics (ISEI5). |
| Journal Article | Goguen, Joseph. 2004. Data, schema and ontology integration. Edited by Lisbon Proceedings of CombLog Workshop 2004. Vol: 2830. (Online version) |
| Journal Article | Goguen, Joseph. 2004. Ontology, society, and ontotheology. Edited by Achille Varzi; Laure Vieu Formal Ontology in Information Systems. IOS Press. Pages 95-103. |
| Journal Article | Goguen, Joseph. 2004. Three perspectives on information integration. Proceedings of Seminar 04391, Semantic Interoperability and Integration. Schloss Dagstuhl, Germany. |
| Journal Article | Goguen, Joseph. 2005. Data, schema, ontology, and logic integration. Logic Journal of the IGPL. Vol: 13(6). Pages 685-715. |
| Journal Article | Goguen, Joseph. 2005. What is a concept?. Edited by Frithjof Dau; MarieLaure Mungier Proceedings of the 13th International Conference on Conceptual Structures (ICCS). Vol: 3596. Pages 52-77. |
| Book Chapter | Goguen, Joseph. In Press. Data, schema, ontology, and logic integration. Edited by Carnielli, W.; Dionisio, M.; Mateus, P.. Combining Logics. |
| Journal Article | Goguen, Joseph. In Press. Information integration in institutions. Edited by Moss, Larry. Jon Barwise Memorial Volume. Indiana University Press. |
| Journal Article | Graham, Martin; Kennedy, Jessie. 2005. Extending taxonomic visualisation to incorporate synonymy and structural markers. Information Visualization. Vol: 4(3). Pages 206-223. |
| Journal Article | Graham, Martin; Kennedy, Jessie; Downey, Laura. 2006. Visual comparison and exploration of natural history collections. Edited by A. Celentano & P. Mussio Advanced Visual Interfaces (AVI) 2006. ACM Press. Venice, Italy. Pages 310-313. |
| Journal Article | Graham, Martin; Kennedy, Jessie. 2007. Exploring multiple trees through DAG representations. IEEE Transactions on Visualization and Computer Graphics. Vol: 13(6). Pages 1294-1301. |
| Journal Article | Graham, Martin; Kennedy, Jessie. 2007. Visual exploration of alternative taxonomies through concepts. Ecological Informatics. Vol: 2 (3). Pages 248-261. |
| Journal Article | Graham, Martin; Craig, Paul; Kennedy, Jessie. 2008. Visualisation to aid biodiversity studies through accurate taxonomic reconciliation. Edited by Gray, A., Jeffery, K., Shao, J. Proceedings of BNCOD 2008 LNCS 5071. Springer-Verlag. Cardiff, UK. Pages 280-291. |
| Journal Article | Iguchi, K.; Matsuura, K.; McNyset, Kristina M.; Peterson, A. Townsend; Pereira, Ricardo S.; Powers, Catherine M.; Vieglais, David A.; Wiley, O.; Yodo, T. 2004. Predicting invasions of North American basses in Japan using native range data and a genetic algorithm. Transactions of the American Fisheries Society. Vol: 133. Pages 845-854. |
| Journal Article | Illoldi, P.; Sanchez-Cordero, V.; Peterson, A. Townsend. 2004. Predicting distributions of Mexican mammals using ecological niche modeling. Journal of Mammalogy. Vol: 85(4). Pages 658-662. |
| Journal Article | Jaeger-Frank, Efrat; Altintas, Ilkay; Zhang, Jianting; Ludaescher, Bertram; Pennington, Deana D.; Michener, William K. 2005. A scientific workflow approach to distributed geospatial data processing using web services. Proceedings of the 17th IEEE International Conference on Scientific and Statistical Database Management (SSDBM). University of California, Santa Barbara. Pages 87-90. |
| Journal Article | Jones, Christopher; Blanchette, Carol A.; Brooke, Matthew; Harris, John; Jones, Matthew B.; Schildhauer, Mark P. 2007. A metadata-driven framework for generating field data entry interfaces in ecology. Ecological Informatics. Vol: 2(3). Pages 270-278. |
| Journal Article | Jones, Matthew B.; Berkley, Chad; Bojilova, Jivka; Schildhauer, Mark P. 2001. Managing scientific metadata. IEEE Internet Computing. Vol: 5(5). Pages 59-68. (Abstract) |
| Journal Article | Jones, Matthew B.; Schildhauer, Mark P.; Reichman, O. J.; Bowers, Shawn. 2006. The new bioinformatics: Integrating ecological data from the gene to the biosphere. Annual Review of Ecology Evolution and Systematics. Vol: 37. Pages 519-544. |
| Journal Article | Jones, Matthew B. 2007. Meta-information systems and ontologies: A special feature from ISEI'06. Ecological Informatics. Vol: 2 (3). Pages 193-194. |
| Journal Article | Kennedy, Jessie; Kukla, Robert; Paterson, T. 2005. Scientific names are ambiguous as identifiers for biological taxa: their context and definition are required for accurate data integration. Proceedings of the International Workshop on Data Integration in the Life Sciences. Vol: 3615. San Diego. Pages 80-95. |
| Journal Article | Kennedy, Jessie; Hyam, R.; Kukla, Robert; Paterson, T. 2006. A standard data model representation for taxonomic information. OMICS-A Journal of Integrative Biology. Pages 102, 220-230. |
| Journal Article | Krivov, Serguei; Villa, Ferdinando. 2005. Towards an ontology-based visual query system. Edited by Ludascher, B.; Raschid, L.. Data Integration in the Life Sciences. Vol: 3615. Pages 313-316. |
| Book Chapter | Krivov, Serguei; Villa, Ferdinando. 2005. Towards the paradigm of an ontology-based user interface: From simple knowledge maps to graphical query languages. Edited by Ludascher, B.; Rashid, L.. 2nd International Workshop on Data Integration in the Life Sciences, University of California, San Diego. Pages 313-315. |
| Book Chapter | Krivov, Serguei; Villa, Ferdinando; Williams, Roberton; Wu, X. 2006. On visualization of OWL ontologies. Edited by Baker, C.J.O.; Cheung, K.H.. Semantic Web: Revolutionizing Knowledge Discovery in the Life Sciences. Springer. New York. |
| Journal Article | Krivov, Serguei; Williams, Richard J.; Villa, Ferdinando. 2007. GrOWL: A tool for visualization and editing of OWL ontologies. Journal of Web Semantics. Pages 54-57. |
| Journal Article | Krivov, Serguei; Villa, Ferdinando. Action ontologies, natural actions and interactions. Journal of Logic and Computation. (Online version) |
| Journal Article | Leinfelder, Ben; Tao, Jing; Costa, Duane; Jones, Matthew B.; Servilla, Mark; O'Brien, Mike; Burt, Chad. 2008. Using metadata for loading and querying heterogeneous scientific data. Edited by Gries C.; Jones M.B.. Proceedings of Environmental Information Management Conference 2008. Pages 90-95. |
| Journal Article | Leinfelder, Ben; Tao, Jing; Costa, Duane; Jones, Matthew B.; Servilla, Mark; O'Brien, Margaret; Burt, Chad. 2010. A metadata-driven approach to loading and querying heterogeneous scientific data. Ecological Informatics. Vol: 5(1). Pages 3-8. (Online version) |
| Journal Article | Levine, R. S.; Benedict, M. Q.; Peterson, A. Townsend. 2004. Distribution of members of Anopheles quadrimaculatus Say s.l. (Diptera: Culicidae) and implications for their roles in malaria transmission in the United States. Journal of Medical Entomology. Vol: 41. Pages 607-613. |
| Journal Article | Levine, R. S.; Peterson, A. Townsend; Benedict, M. Q. 2004. Geographic and ecologic distributions of the anopheles gambiae complex predicted using a genetic algorithm. American Journal of Tropical Medicine and Hygiene. Vol: 70. Pages 105-109. |
| Journal Article | Lin, Kai; Ludaescher, Bertram. 2003. A system for semantic integration of geologic maps via ontologies [abstract]. Semantic Web Technologies for Searching and Retrieving Scientific Data (SCISW). Sanibel Island, Florida. |
| Journal Article | Linke, S.; Norris, Richard; Faith, Dan; Stockwell, David. 2005. ANNA: A new prediction method for bioassessment programs. Freshwater Biology. Vol: 50. Pages 1, 147. |
| Book Chapter | Ludaescher, Bertram; Gupta, A.; Martone, M. E. 2003. A model-based mediator system for scientific data management. Edited by Lacroix, Z.; Critchlow, T.. Bioinformatics: Managing Scientific Data (Morgan Kaufmann). |
| Journal Article | Ludaescher, Bertram; Altintas, Ilkay; Gupta, A. 2003. Compiling abstract scientific workflows into web service workflows. Proceedings of the 15th IEEE International Conference on Scientific and Statistical Database Management (SSDBM). Boston, Massachussets. |
| Journal Article | Ludaescher, Bertram; Nash, A. 2004. Web service composition through declarative queries: The case of conjunctive queries with union and negation [abstract]. 20th International Conference on Data Engineering (ICDE). |
| Journal Article | Ludaescher, Bertram; Lin, Kai; Bowers, Shawn; Jaeger-Frank, Efrat; Brodaric, B.; Baru, Chaitan. 2006. Managing scientific data: from data integration to scientific workflows. GSA Today (Special Issue on Geoinformatics). |
| Journal Article | Ludaescher, Bertram; Altintas, Ilkay; Berkley, Chad; Higgins, Dan; Jaeger-Frank, Efrat; Jones, Matthew B.; Lee, Edward A.; Tao, Jing; Zhao, Yang. 2006. Scientific workflow management and the kepler system. Concurrency and Computation-Practice & Experience. Vol: 18. Pages 1039-1065. |
| Journal Article | Ludaescher, Bertram; Bowers, Shawn; McPhillips, Timothy; Podhorszki, N. 2006. Scientific workflows: More e-science mileage from cyberinfrastructure. Proceedings of the IEEE International Conference on e-Science Workshop on Scientific Workflows and Business Workflow Standards in e-Science. Pages 145. |
| Journal Article | Ludaescher, Bertram. 2006. Scientific workflows: Towards a new synthesis for information integration. Proceedings of the Workshop on Information Integration. |
| Journal Article | Ludaescher, Bertram; Podhorszki, N.; Altintas, Ilkay; Bowers, Shawn; McPhillips, Timothy. 2008. From computation models to models of provenance: The RWS approach. Concurrency and Computation-Practice & Experience. Vol: 20(5). Pages 507-518. |
| Book Chapter | Ludaescher, Bertram; Bowers, Shawn; McPhillips, Timothy. 2009. Scientific workflows. Edited by Tamer Oszu, M.; Liu, L. Encyclopedia of Database Systems. Springer-Verlag. Pages 2507-2511. |
| Journal Article | Madin, Joshua S.; Bowers, Shawn; Schildhauer, Mark P.; Krivov, Serguei; Pennington, Deana D.; Villa, Ferdinando. 2007. An ontology for describing and synthesizing ecological observation data. Ecological Economics . Vol: 2. Pages 279-296. |
| Journal Article | Madin, Joshua S.; Bowers, Shawn; Schildhauer, Mark P.; Jones, Matthew B. 2008. Advancing ecological research with ontologies. Trends in Ecology & Evolution. Vol: 23(3). |
| Journal Article | Marciano, Richard; Chien-Yi, Hou; Burnstan, Lynn; Kreisler, Harry; Moore, Reagan; Rajasekar, Arcot. 2006. Long-term preservation of large-scale multimedia collections: A digital workflow approach. Archiving 2006. Ottawa, Canada. |
| Journal Article | Martínez-Meyer, Enrique; Peterson, A. Townsend; Hargrove, William W. 2004. Ecological niches as stable distributional constraints on mammal species, with implications for Pleistocene extinctions and climate change projections for biodiversity. Global Ecology and Biogeography. Vol: 13. Pages 305-314. |
| Journal Article | Martínez-Meyer, Enrique; Peterson, A. Townsend; Navarro-Sigenza, A. G. 2004. Evolution of seasonal ecological niches in the Passerina buntings (aves: cardinalidae). Proceedings of the Royal Society B-Biological Sciences. Vol: 271. Pages 1151-1157. |
| Journal Article | McPhillips, Timothy; Bowers, Shawn. 2005. An approach for pipelining nested collections in scientific workflows. SIGMOD Record. Vol: 34(3). Pages 12-17. |
| Journal Article | McPhillips, Timothy; Bowers, Shawn; Ludaescher, Bertram. 2006. Collection-oriented scientific workflows for integrating and analyzing biological data. 3rd International Workshop on Data Integration in the Life Sciences (DILS), European Bioinformatics Institute (EBI). Hinxton, UK. |
| Journal Article | McPhillips, Timothy; Bowers, Shawn; Zinn, Daniel; Ludaescher, Bertram. 2008. Scientific workflow design for mere mortals. Future Generation Computer Systems. Vol: 25. Pages 541-551. |
| Journal Article | Michener, William K.; Beach, James H.; Bowers, Shawn; Downey, Laura; Jones, Matthew B.; Ludaescher, Bertram; Pennington, Deana D.; Rajasekar, Arcot; Romanello, Samantha J.; Schildhauer, Mark P.; Vieglais, David A.; Zhang, Jianting. 2005. Data integration and workflow solutions for ecology. Data Integration in the Life Sciences. Vol: 3615. Pages 321-324. |
| Journal Article | Michener, William K.; Beach, James H.; Bowers, Shawn; Downey, Laura; Jones, Matthew B.; Ludaescher, Bertram; Pennington, Deana D.; Rajasekar, Arcot; Romanello, Samantha J.; Schildhauer, Mark P.; Vieglais, David A.; Zhang, Jianting. 2005. SEEK: Data integration and workflow solutions for ecology. Proceedings of the Workshop on Data Integration in the Life Sciences (DILS), LNCS. Vol: 3615. Pages 321-324. |
| Journal Article | Michener, William K. 2006. Meta-information concepts for ecological data management. Informatics. Vol: 1. Pages 3-7. |
| Journal Article | Mitchener, William K.; Beach, James H.; Jones, Matthew B.; Ludaescher, Bertram; Pennington, Deana D.; Pereira, Ricardo S.; Rajasekar, Arcot; Schildhauer, Mark P. 2007. A knowledge environment for the biodiversity and ecological sciences. Journal of Intelligent Information Systems. Vol: 29. Pages 111-126. |
| Journal Article | Moore, Reagan; Chen, Sheau-Yen; Schroeder, Wayne; Rajasekar, Arcot; Wan, Michael; Jagatheesan, Arun. 2006. Storage resource broker global data grids. 23rd IEEE Conference on Mass Storage Systems and Technologies. College Park, Maryland. |
| Journal Article | Nakazawa, Yoshinori; Peterson, A. Townsend; Martínez-Meyer, Enrique; Navarro-Sigenza, A. G. 2004. Seasonal niches of nearctic-neotropical migratory birds: Implications for the evolution of migration. Auk. Vol: 121. Pages 610-618. |
| Journal Article | Nam, Young-Kwang; Goguen, Joseph; Wang, Guilian. 2002. A metadata integration assistant generator for heterogeneous distributed databases. Proceedings of the 16th Conference on Ontologies, Databases, and Applications of Semantics for Large Scale Information Systems. Vol: 2519. Pages 1331. |
| Journal Article | Nam, Young-Kwang; Goguen, Joseph; Wang, Guilian. 2003. A metadata tool for retrievalfrom heterogeneous distributed XML documents. Lecture Notes in Computer Science. Vol: 2660. Pages 716. |
| Journal Article | Nash, A.; Ludaescher, Bertram. 2004. Processing first-order queries with limited access patterns. ACM Symposium on Principles of Database Systems (PODS). Paris, France. |
| Journal Article | Nash, A.; Ludaescher, Bertram. 2004. Processing unions of conjunctive queries with negation under limited access patterns. International Conference on Extending Database Technology (EDBT). |
| Journal Article | Ngu, A. H.; Bowers, Shawn; McPhillips, Timothy; Critchlow, T.; Haasch, N. 2008. Flexible scientific workflow modeling using frames, templates, and dynamic embedding. Proceedings of the International Conference on Statistical and Scientific Databases (SSDBM). Pages 566-572. |
| Journal Article | Oberhauser, Karen; Peterson, A. Townsend. 2004. Modeling current and future potential wintering distributions of eastern North American monarch butterflies. Proceedings of the National Academy of Sciences. Vol: 100. Pages 14063-14068. |
| Journal Article | Ortega-Huerta, Miguel A.; Peterson, A. Townsend. 2003. Geographic scale effects on ecological distributions of Mexican birds. Serie Zoologia. Vol: 74(2). Anales del Instituto de Biologia, U.N.A.M.. Pages 203-210. |
| Journal Article | Papes, M.; Peterson, A. Townsend. 2003. Predicting the potential invasive distribution for Eupatorium adenophorum Spreng. in China. Journal of Wuhan Botanical Research. Vol: 21. Pages 137-142. |
| Journal Article | Pennington, Deana D. 2005. Cyberinfrastructure for grassland biodiversity studies. LTER Network News. |
| Journal Article | Pennington, Deana D.; Michener, William K. 2005. The EcoGrid and the Kepler workflow system: a new platform for conducting ecological analyses. Bulletin of the Ecological Society of America (Emerging Technologies). Vol: 86(3). Pages 169-176. |
| Journal Article | Pennington, Deana D. 2006. Representing the dimensions of an ecological niche. 5th International Semantic Web Conference (ISWC) Workshop. Athens, Georgia. |
| Journal Article | Pennington, Deana D.; Madin, Joshua S.; Villa, Ferdinando; Athanasiadis, I. N. 2007. Computer-supported collaborative knowledge modeling in ecology. Edited by Noy, N.; Alani,H.; Stumme, G.; Mika,P.; Sure, Y.; Vrandecic, D.. Proceedings of the Workshop on Social and Collaborative Construction of Structured Knowledge, 16th International World Wide Web Conference (WWW). Banff, Canada. |
| Book Chapter | Pennington, Deana D.; Higgins, Dan; Peterson, A. Townsend; Jones, Matthew B.; Ludaescher, Bertram; Bowers, Shawn. 2007. Ecological niche modeling using the kepler workflow system. Workflows for eScience: Scientific Workflows for Grids. Springer. |
| Journal Article | Pennington, Deana D. 2007. Exploratory modeling of forest disturbance scenarios in central Oregon using computational experiments in GIS. Ecological Informatics. Vol: 2(4). Pages 387-403. |
| Journal Article | Pennington, Deana D. 2007. Supporting large-scale science with workflows. Proceedings of the 2nd Workshop on Workflows in Support of Large-Scale Science. Monterey Bay, California. |
| Journal Article | Pennington, Deana D. 2008. Cross-disciplinary collaboration and learning. Ecology and Society. Vol: 13(2). Pages 8. |
| Journal Article | Pennington, Deana D.; Athanasiadis, I. N.; Bowers, Shawn; Krivov, Serguei; Madin, Joshua S.; Schildhauer, Mark P.; Villa, Ferdinando. 2008. Indirectly driven knowledge modeling in ecology. International Journal of Metadata, Semantics and Ontologies. Vol: 3(3). Pages 210-225. |
| Journal Article | Pennington, Deana D.; Michener, William K.; Katz, Samantha; Downey, Laura; Schildhauer, Mark P. 2008. Transforming scientists through technical education - a view from the trenches. Computing in Science & Engineering. Vol: 10(5). Pages 28-33. |
| Journal Article | Pennington, Deana D. Collaborative research teams as dynamic distributed cognitive systems. Computer Supported Cooperative Work. |
| Journal Article | Peterson, A. Townsend; Vieglais, David A.; Navarro-Sigenza, A. G.; Silva, M. 2003. A global distributed biodiversity information network: Building the world museum. Bulletin of the British Ornithologists' Club. Vol: 123A. Pages 186-196. |
| Journal Article | Peterson, A. Townsend; Pereira, Ricardo S.; Kluza, D. A. 2003. Assessment of invasive potential of Homalodisca coagulata in western North America and South America. Biota Neotropica. (Online version) |
| Journal Article | Peterson, A. Townsend; Shaw, J. J. 2003. Lutzomyia vectors for cutaneous leishmaniasis in southern Brazil: Ecological niche models, predicted geographic distributions, and climate change effects. International Journal of Parasitology. Vol: 33. Pages 919-931. |
| Journal Article | Peterson, A. Townsend; Vieglais, David A.; Andreasen, J. 2003. Migratory birds modeled as critical transport agents for west nile virus in North America. Vector-Borne and Zoonotic Diseases. Vol: 3(1). Pages 27-37. |
| Journal Article | Peterson, A. Townsend; Kluza, D. A. 2003. New distributional modeling approaches for gap analysis. Animal Conservation. Vol: 6. The Zoological Society of London. Pages 47-54. |
| Journal Article | Peterson, A. Townsend; Holt, Robert D. 2003. Niche differentiation in Mexican birds: Using point occurrences to detect ecological innovation. Ecology Letters. Vol: 6(8). Pages 774-782. |
| Journal Article | Peterson, A. Townsend. 2003. Predicting the geography of species' invasions via ecological niche modeling. Quarterly Review of Biology. Vol: 78(4). The University of Chicago Press. Pages 419-433. |
| Journal Article | Peterson, A. Townsend; Papes, M.; Kluza, D. A. 2003. Predicting the potential invasive distributions of four alien plant species in North America. Weed Science. Vol: 51. Pages 863-868. |
| Journal Article | Peterson, A. Townsend. 2003. Projected climate change effects on Rocky Mountain and Great Plains birds: Generalities of biodiversity consequences. Global Change Biology. Vol: 9. Pages 647-655. |
| Journal Article | Peterson, A. Townsend; Robins, C. R. 2003. Using ecological-niche modeling to predict barred owl invasions with implications for spotted owl conservation. Conservation Biology. Vol: 17. Pages 1161-1165. |
| Book Chapter | Peterson, A. Townsend. 2004. Climate change effects on species and biodiversity. Edited by Ragaini, R.. International Seminar on Nuclear War and Planetary Emergencies, 30th Session. World Scientific, New Jersey. Pages 59-68. |
| Journal Article | Peterson, A. Townsend; Navarro-Sigenza, A. G.; Pereira, Ricardo S. 2004. Detecting errors in biodiversity data based on collectors' itineraries. Bulletin of the British Ornithologists' Club. Vol: 124(2). Pages 143-151. |
| Journal Article | Peterson, A. Townsend; Bauer, John T.; Mills, James N. 2004. Ecological and geographic distribution of filovirus disease. Emerging Infectious Diseases. Vol: 10(1). Pages 40-47. |
| Journal Article | Peterson, A. Townsend; Martínez-Meyer, Enrique; Gonzalez-Salazar, C.; Hall, Peter W. 2004. Modeled climate change effects on distributions of Canadian butterfly species. Canadian Journal of Zoology-Revue Canadienne de Zoologie. Vol: 82. Pages 851-858. |
| Journal Article | Peterson, A. Townsend; Pereira, Ricardo S.; Hargrove, William W. 2004. Potential geographic distribution of Anoplophora glabripennis (Coleoptera: Cerambycidae) in North America. American Midland Naturalist. Vol: 151. Pages 170-178. |
| Journal Article | Peterson, A. Townsend; Pereira, Ricardo S.; de Camargo Neves, Vera Lucia Fonseca. 2004. Using epidemiological survey data to infer geographic distributions of leishmania vector species. Revista da Sociedade Brasileira de Medicina Tropical. Vol: 37. Pages 10-14. |
| Journal Article | Peterson, A. Townsend; Komar, Nicholas; Komar, Oliver; Navarro-Sigenza, A. G.; Robbins, Mark B.; Martínez-Meyer, Enrique. 2004. West nile virus in the new world: Potential impacts on bird species. Bird Conservation International. Vol: 14. Pages 215-232. |
| Journal Article | Peterson, A. Townsend. 2005. Kansas gap analysis: The importance of validating distributional models before using them. Southwestern Naturalist. Vol: 50(2). Southwestern Association of Naturalists. Pages 230-236. |
| Book Chapter | Peterson, A. Townsend; Tian, H.; Martínez-Meyer, Enrique; Huntley, Brian; Soberon Mainero, Jorge; Sanchez-Cordero, V. 2005. Modeling distributional shifts of individual species and biomes. Biodiversity and Climate Change. Yale University. New Haven, CT. |
| Journal Article | Podhorszki, N.; Ludaescher, Bertram; Klasky, Scott A. 2007. Workflow automation for processing plasma fusion simulation data. Proceedings of the 2nd Workshop on Workflows in Support of Large-Scale Science. ACM. New York. Pages 35-44. |
| Journal Article | Rajasekar, Arcot; Wan, Michael; Moore, Reagan; Kremenek, George; Guptil, Tom. 2003. Data grids, collections and grid bricks. Proceedings of the 20th IEEE/11th NASA Goddard Conference on Mass Storage Systems and Technologies (MSS). Pages 2. |
| Journal Article | Rajasekar, Arcot; Wan, Michael; Moore, Reagan; Schroeder, Wayne; Kremenek, George; Jagatheesan, Arun; Cowart, C.; Zhu, Bing; Chen, Sheau-Yen; Olschanowsky, Roman. 2003. Storage resource broker managing distributed data in a grid. Computer Society of India Journal. Vol: 33(4). Pages 42-54. |
| Journal Article | Rajasekar, Arcot; Wan, Michael; Moore, Reagan; Schroeder, Wayne. 2004. Data grid federation. Proceedings of the 11th International Conference on Parallel (Special Session on New Trends in Distributed Data Access). |
| Journal Article | Rajasekar, Arcot; Lu, Sifang; Moore, Reagan; Vernon, Frank; Orcutt, John; Lindquist, Kent. 2005. Accessing sensor data using meta data: A virtual object ring buffer framework. ACM International Conference Proceedings Series, 2nd International Workshop on Data Management for Sensor Networks. Vol: 96. Pages 35 - 42. |
| Journal Article | Rajasekar, Arcot; Moore, Reagan; Berman, Francine; Schottlaender, Brian. 2005. Digital preservation lifecycle management for multi-media collections. International Conference on Asian Digital Libraries 2005. Vol: 3815. Pages 380-384. |
| Journal Article | Rajasekar, Arcot; Marciano, Richard; Moore, Reagan; Hou, Chien-Yi; Berman, Francine; Burstan, Lynn; Anderson, Steve; McEwen, Mellisa; Bornheimer, Bee; Schottlaender, Brian; DeClerck, Luc; Westbrook, Brad; Hutt, Arwen; Kozbial, Ardys; Frymann, Chris; Chu, Vivian. 2006. Building a demonstration prototype for the preservation of large-scale multimedia collections. Proceedings of the 2006 international conference on Digital government research. Vol: 151. Pages 287 - 288. |
| Journal Article | Raxworthy, Christopher J.; Martínez-Meyer, Enrique; Horning, Ned; Nussbaum, Ronald A.; Schneider, Gregory E.; Ortega-Huerta, Miguel A.; Peterson, A. Townsend. 2003. Predicting distributions of known and unknown reptile species in Madagascar. Nature. Vol: 426. Pages 837-841. |
| Journal Article | Rice, Nathan H.; Martínez-Meyer, Enrique; Peterson, A. Townsend. 2003. Ecological niche differentiation in the Aphelocoma jays: A phylogenetic perspective. Biological Journal of the Linnean Society. Vol: 80. Pages 369383. |
| Journal Article | Rizzoli, Andrea M.; Donatelli, Marcello; Muetzelfeldt, Robert; Otjens, Tonny; Svensson, Mats G.E.; van Evert, Frits K.; Villa, Ferdinando; Bolte, John. 2004. SEAMFRAME: a proposal for an integrated modelling framework for agricultural systems. Proceedings of the 8th ESA Congress. Pages 331-332. |
| Journal Article | Rizzoli, Andrea M.; Svensson, Mats G.E.; Rowe, E. C.; Donatelli, Marcello; Muetzelfeldt, Robert; van der Wal, T.; Villa, Ferdinando. 2005. Modelling Framework (SeamFrame) requirements. System for Environmental and Agricultural Modelling; Linking European Science and Society. |
| Journal Article | Rizzoli, Andrea M.; Athanasiadis, I. N.; Donatelli, Marcello; Huber, D.; Muetzelfeldt, Robert; van Evert, Frits K.; van de Broek, M.; van der Wal, T.; Villa, Ferdinando. 2005. Overall architectural design of SeamFrame. System for Environmental and Agricultural Modelling; Linking European Science and Society. Vol: 7. |
| Journal Article | Rizzoli, Andrea M.; Donatelli, Marcello; Athanasiadis, I. N.; Villa, Ferdinando; Muetzelfeldt, Robert; Huber, D. 2005. Semantic links in integrated modelling frameworks. Edited by Zerger, A.; Argent, R. M.. Proceedings of the International Congress on Modelling and Simulation (MODSIM). Pages 704-710. |
| Journal Article | Rizzoli, Andrea M.; Leavesley, G.; Ascough, J. C.; Argent, R. M.; Athanasiadis, I. N.; Brilhante, V.; Claeys, F. H. A.; David, O.; Donatelli, Marcello; Gijsbers, P.; Havlik, D.; Kassahun, A.; Krause, Peter; Quinn, N. W. T.; Scholten, H.; Sojda, R. S.; Villa, Ferdinando. 2008. Integrated modelling frameworks for environmental assessment and decision support. Edited by Jakeman. A. J., Voinov, A. A., Rizzoli, A.E., and Chen, S.H. Environmental Modelling, Software and Decision Support: State of the Art and New Perspectives. Vol: 3. Elsevier. Amsterdam. Pages 101-118. |
| Journal Article | Romanello, Samantha J. 2005. A coming of age. LTER Network News. |
| Journal Article | Romanello, Samantha J.; Beach, James H.; Bowers, Shawn; Jones, Matthew B.; Ludaescher, Bertram; Michener, William K.; Pennington, Deana D.; Rajasekar, Arcot; Schildhauer, Mark P. 2005. Creating and providing data management services for the biological and ecological sciences: Science environment for ecological knowledge. Proceedings of the 17th IEEE International Conference on Scientific and Statistical Database Management (SSDBM). |
| Journal Article | Romanello, Samantha J. 2005. Informatics training lab opens at LNO. LTER Network News. |
| Journal Article | Romanello, Samantha J.; Dervin, B.; Fortner, F.; Heimlich, J. Differences in natural and social scientists assessments of the philosophic nature of uncertainty and the implications for the communication of global climate change. Climatic Change. |
| Journal Article | Romanello, Samantha J.; Dervin, B.; Fortner, F.; Heimlich, J. The nature of disagreements between natural and social scientists during discussions of global climate change. Global Environmental Change-Human and Policy Dimensions. |
| Journal Article | Siqueira, Marinez D.F.; Peterson, A. Townsend. 2003. Consequences of global climate change for geographic distributions of Cerrado Tree species. Biota Neotropica. Vol: 3(2). |
| Journal Article | Soberon Mainero, Jorge; Peterson, A. Townsend. 2004. Biodiversity informatics: Managing and applying primary biodiversity data. Philosophical Transactions of the Royal Society B-Biological Sciences. Vol: 359. Pages 689-698. |
| Journal Article | Stockwell, David; Peterson, A. Townsend. 2003. Comparison of resolution of methods used in mapping biodiversity patterns from point occurrence data. Ecological Indicators. Vol: 3. Pages 213-221. |
| Journal Article | Stockwell, David; Wang, Jason T.L. 2005. Biomonitoring, phylogenetics and anomaly aggregation systems. Lecture Notes in Computer Science. Vol: 3495. Pages 523-529. |
| Journal Article | Stockwell, David. 2006. Improving ecological niche models by data mining large environmental datasets. Ecological Modelling. Vol: 192. Pages 188-196. |
| Journal Article | Stockwell, David. 2006. Reconstruction of past climate using series with red noise. Australian Institute of Geologists News. Vol: 83. Pages 14. |
| Journal Article | Stockwell, David; Beach, James H.; Stewart, Aimee; Vorontsov, Gregory; Vieglais, David A.; Scachetti Pereira, Ricardo. 2006. The use of the GARP genetic algorithm and Internet grid computing in the Lifemapper world atlas of species biodiversity. Ecological Modelling. Vol: 195. Pages 139-145. |
| Journal Article | Stockwell, David; Ryder, O.; Youkharibac, P. Informatics issues in integrated biodiversity resource archives: Problems and solutions. Environmental Informatics. |
| Journal Article | Thau, Dave; Ludaescher, Bertram. 2007. Reasoning about taxonomies in first-order logic. Ecological Informatics. Vol: 2 (3). Pages 195-209. |
| Journal Article | Thau, Dave; Bowers, Shawn; Ludaescher, Bertram. 2008. Merging taxonomies under RCC-5 algebraic articulations. Proceedings of the CIKM Workshop on Ontologies and Information Systems for the Semantic Web. Pages 47-54. |
| Journal Article | Thau, Dave. 2008. Reasoning about taxonomies and articulations. Proceedings of the 2008 EDBT Ph.D. workshop. Pages 11-19. |
| Journal Article | Thomas, Chris D.; Williams, Stephen E.; Cameron, Alison; Green, Rhys E.; Bakkenes, Michel; Beaumont, Linda J.; Collingham, Yvonne C.; Erasmus, Barend F.N.; Siqueira, Marinez D.F.; Grainger, Alan; Hannah, Lee; Hughes, Lesley; Huntley, Brian; van Jaarsveld, Albert S.; Midgley, Guy F.; Miles, Lera; Ortega-Huerta, Miguel A.; Peterson, A. Townsend; Phillips, Oliver. 2004. Biodiversity conservation: Uncertainty in predictions of extinction risk/Effects of changes in climate and land use/Climate change and extinction risk (reply). Brief Communications Arising. Vol: 430(6995). Pages 12. |
| Journal Article | Thomas, Chris D.; Cameron, Alison; Green, Rhys E.; Bakkenes, Michel; Beaumont, Linda J.; Collingham, Yvonne C.; Erasmus, Barend F.N.; Siqueira, Marinez D.F.; Grainger, Alan; Hannah, Lee; Hughes, Lesley; Huntley, Brian; van Jaarsveld, Albert S.; Midgley, Guy F.; Miles, Lera; Ortega-Huerta, Miguel A.; Peterson, A. Townsend; Phillips, Oliver; Williams, Stephen E. 2004. Extinction risk from climate change. Nature. Vol: 427. Pages 145-148. |
| Book Chapter | Vanderbilt, Kristin; Michener, William K. 2007. Information management standards and strategies for net primary production data. Edited by Fahey, Timothy J.; Knapp, Alan K. Principles and Standards for Measuring Primary Production. Oxford Scholarship. |
| Journal Article | van Evert, Frits K.; Holzworth, Dean; Muetzelfeldt, Robert; Rizzoli, Andrea M.; Villa, Ferdinando. 2005. Convergence among integrated modeling frameworks. Proceedings of the International Congress on Modelling and Simulation (MODSIM). |
| Journal Article | Vernon, Frank; Hansen, Thor A.; Lindquist, Kent; Ludaescher, Bertram; Orcutt, John; Rajasekar, Arcot. 2006. ROADNET: A Real-time Data Aware System for Earth, Oceanographic, and Environmental Applications. EOS, Transactions, American Geophysical Union. Vol: 84(46). |
| Book Chapter | Villa, Ferdinando; Voinov, A.; Fitz, C.; Costanza, Robert. 2004. Performance and goodness of fit of complex simulation models: A multi-criteria approach to model calibration using the Model Performance Index (MPI) framework. Edited by Costanza, R.; Voinov, A.. Landscape Simulation Modelling: a Spatially Explicit, Dynamic Approach. Springer-Verlag. New York. Pages 77-118. |
| Journal Article | Villa, Ferdinando. 2005. A semantic model of computation for natural system modelling. Proceedings of the International Congress on Modelling and Simulation (MODSIM). Pages 751-757. |
| Journal Article | Villa, Ferdinando. 2005. Book review: H.G. Natke, introduction to multi-disciplinary model building. Ecological Economics. Vol: 53(3). Pages 431-432. |
| Journal Article | Villa, Ferdinando. 2005. Design of the domain manager component of SEAMFRAME. Refereed European Union report SEAMLESS. Vol: PD5.3.2. Pages 54. |
| Journal Article | Villa, Ferdinando; Athanasiadis, I. N. 2005. Guidelines for populating the SEAMLESS knowledge base. Refereed European Union report SEAMLESS. Vol: PD4.2.1. Pages 20. |
| Journal Article | Villa, Ferdinando; Ceroni, M.; de Groot, Rudolf. 2005. Setting the basis for a worldwide coordination for the economic valuation of ecosystem services. Gund White paper. Vol: 39(6). Pages 887-899. |
| Journal Article | Villa, Ferdinando; Donatelli, Marcello; Rizzoli, Andrea M.; Krause, Peter; Kralisch, Sven; van Evert, Frits K. 2006. Declarative modelling for architecture independence and data/model integration: A case study. IEMSS Summit on Environmental Modelling. |
| Journal Article | Villa, Ferdinando; Athanasiadis, I. N.; Johnson, Gary W. 2007. An ontology for the semantic modelling of natural systems.. 15th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB) & 6th European Conference on Computational Biology (ECCB). |
| Journal Article | Villa, Ferdinando. 2007. A semantic framework and software design to enable the transparent integration, reorganization and discovery of natural systems knowledge. Journal of Intelligent Information Systems. Vol: 29(1). Pages 79-96. |
| Journal Article | Villa, Ferdinando; Athanasiadis, I. N.; Rizzoli, Andrea M. 2007. The SEAMLESS knowledge manager. Refereed European Union report SEAMLESS. Vol: PD5.4.2.2. Pages 14. |
| Journal Article | Villa, Ferdinando; Athanasiadis, I. N.; Rizzoli, Andrea M. 2009. Modelling with knowledge: A review of emerging semantic approaches to environmental modelling. Environmental Modelling & Software. Vol: 24(5). Pages 577-587. |
| Journal Article | Villa, Ferdinando; Krivov, Serguei. Semantically-driven databases: Towards machine-assisted knowledge discovery. Environmental Modelling & Software. |
| Journal Article | Villa, Ferdinando; Athanasiadis, I. N.; Krivov, Serguei; Johnson, Gary W.; Rizzoli, Andrea M. Thinklab: An infrastructure for semantic decision support systems. Environmental Modelling & Software. |
| Journal Article | Villa, Ferdinando; de Groot, Rudolf; Ceroni, M.; Zijlstra, M. Towards a coordinated strategy to facilitate and oversee a transparent practice of ecosystem services valuation. Ecological Economics. |
| Journal Article | Wan, Michael; Rajasekar, Arcot; Moore, Reagan; Andrews, Phil. 2003. A simple mass storage system for the SRB data grid. Proceedings of the 20th IEEE/11th NASA Goddard Conference on Mass Storage Systems and Technologies (MSS). Pages 20-25. |
| Journal Article | Wang, Guiming; Goguen, Joseph; Nam, Young-Kwang; Lin, Kai. 2004. Critical points for interactive schema matching. Advanced Web Technologies and Applications. Vol: 3007. Pages 654-664. |
| Journal Article | Wang, Jianwu; Altintas, Ilkay; Berkley, Chad; Gilbert, Lucas; Jones, Matthew B. 2008. A high-level distributed execution framework for scientific workflows. 4th IEEE International Conference on e-Science. Pages 634-639. |
| Journal Article | Wiley, O.; McNyset, Kristina M.; Peterson, A. Townsend; Robins, C. R.; Stewart, Aimee. 2003. Niche modeling and geographic range predictions in the marine environment using a machine-learning algorithm. Oceanography. Vol: 16. Pages 120-127. |
| Book Chapter | Wiley, O.; Peterson, A. Townsend. 2004. Biodiversity and the Internet: Building and using the virtual world museum. Edited by Scharl, A.. Environmental Online Communication. Springer-Verlag. London. Pages 91-99. |
| Journal Article | Zhang, Jianting; Pennington, Deana D.; Michener, William K. 2005. Using web services and scientific workflow for species distribution prediction modeling. 6th International Conference on Web-Age Information Management (WAIM). Vol: 3739. Pages 610-617. |
| Journal Article | Zhang, Jianting; Pennington, Deana D.; Michener, William K. 2005. Validating compositions of geospatial processing web services in a scientific workflow environment. 3rd IEEE International Conference on Web Services (ICWS). Pages 821-822. |
| Journal Article | Zhang, Jianting. 2006. Ontology-driven composition and validation of scientific grid workflows in Kepler: A case study of hyperspectral image processing. Proceedings of the 5th International Conference on Grid and Cooperative Computing (GCC). Pages 282-289. |
| Journal Article | Zhang, Jianting; Gruenwald, Le. 2006. Opening the black box of feature extraction: Incorporating visualization into high-dimensional data mining processes. 6th International Conference on Data Mining (ICDM). Pages 1188-1192. |
| Journal Article | Zhang, Jianting; Herbert, Katherine G.; Wang, Jason T.L.; Piel, William; Stockwell, David. 2006. PhyloMiner: A tool for evolutionary data analysis. Proceedings of the 18th IEEE International Conference on Scientific and Statistical Database Management (SSDBM). Pages 129-132. |
| Journal Article | Zhang, Jianting. 2006. Tracking dynamics of geospatial phenomena in distributed and heterogeneous environments using scientific workflow and web services technologies. Proceedings of the 5th International Conference on Grid and Cooperative Computing (GCC). |
| Journal Article | Zhang, Jianting; Pennington, Deana D.; Liu, Xianhua. 2007. GBD-Explorer: Extending open source java GIS for exploring ecoregion-based biodiversity data. Ecological Economics. Vol: 2(2). Pages 94-102. |
| Journal Article | Zhang, Jianting; Pennington, Deana D.; Michener, William K. 2007. Performance evaluations of geospatial web services composition and invocation. Proceedings of the 5th IEEE International Conference on Web Services (ICWS). |
| Journal Article | Zinn, Daniel; Bowers, Shawn; McPhillips, Timothy; Ludaescher, Bertram. 2008. X-CSR: Dataflow optimization for XML processing pipelines. International Conference on Data Engineering (ICDE). Pages 1. |