%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% beamer %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% To run - pdflatex filename.tex
%	   acroread filename.pdf
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%\documentclass[handout,red]{beamer}
\documentclass[compress,red]{beamer}
\mode<presentation>

\usetheme{Madrid}%Warsaw
% other themes: AnnArbor, Antibes, Bergen, Berkeley, Berlin, Boadilla, boxes, CambridgeUS, Copenhagen, Darmstadt, default, Dresden, Frankfurt, Goettingen,
% Hannover, Ilmenau, JuanLesPins, Luebeck, Madrid, Maloe, Marburg, Montpellier, PaloAlto, Pittsburg, Rochester, Singapore, Szeged, classic

%\usecolortheme{lily}
% color themes: albatross, beaver, beetle, crane, default, dolphin, dov, fly, lily, orchid, rose, seagull, seahorse, sidebartab, structure, whale, wolverine

%\usefonttheme{serif}
% font themes: default, professionalfonts, serif, structurebold, structureitalicserif, structuresmallcapsserif

\hypersetup{pdfpagemode=FullScreen} % makes your presentation go automatically to full screen

% define your own colors:
\definecolor{Red}{rgb}{1,0,0}
\definecolor{Blue}{rgb}{0,0,1}
%\definecolor{Black}{rgb}{0,0,1}
\definecolor{Green}{rgb}{0,1,0}
\definecolor{magenta}{rgb}{1,0,.6}
\definecolor{lightblue}{rgb}{0,.5,1}
\definecolor{lightpurple}{rgb}{.6,.4,1}
\definecolor{gold}{rgb}{.6,.5,0}
\definecolor{orange}{rgb}{1,0.4,0}
\definecolor{hotpink}{rgb}{1,0,0.5}
\definecolor{newcolor2}{rgb}{.5,.3,.5}
\definecolor{newcolor}{rgb}{0,.3,1}
\definecolor{newcolor3}{rgb}{1,0,.35}
\definecolor{darkgreen1}{rgb}{0, .35, 0}
\definecolor{darkgreen}{rgb}{0, .6, 0}
\definecolor{darkred}{rgb}{.75,0,0}

\xdefinecolor{olive}{cmyk}{0.64,0,0.95,0.4}
\useoutertheme[subsection=false]{smoothbars}
\beamertemplateshadingbackground{red!9}{blue!4}
\setbeamertemplate{footline}[text line]{} % makes the footer EMPTY

% include packages
\usepackage{subfigure}
\usepackage{natbib}
\usepackage{cite}
\usepackage{multicol}
\usepackage{amsmath}
\usepackage{epsfig}
\usepackage{graphicx}
\usepackage[all,knot]{xy}
\xyoption{arc}
\usepackage{url}
\usepackage{tikz}
\usepackage{amsmath}
\usepackage{verbatim}
\usetikzlibrary{arrows,shapes}
\usepackage{multimedia}
\usepackage{hyperref}
%\usepackage{animate}
     
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% Title Page Info %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\vspace{-7 in}
%\flushleft {{\upshape \tiny \em{\LaTeX\ seminar style \& Beamer}}}
\\
\\
\title{Collaborations and Synthesis in Ecology^{1}}\\
\institute{February 27, 2009}
\vspace{0.25 in}
\date{\tiny 1. Connors, M., and Meli\'an, C. J. Strategies for Ecology, Education, Diversity and Sustainability,\\ Albuquerque February 26-March 1, 2009}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% Begin Document %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

\begin{document}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

\frame{
	\titlepage 
}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

%\section[Outline]{}	% this puts the outline before EACH section automatically & will highlight the section you're about to talk about
%\frame{\tableofcontents}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

%16%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\frame{\frametitle{Thanks!}
\begin{itemize}
\item Computing-scientist staff-postdocs at the National Center for Ecological Analysis and Synthesis (NCEAS)
\end{itemize}
}
\section{What is Synthesis?}

\subsection{What is Synthesis?}
%1%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\frame{
\begin{itemize}
\item < 1-| alert@1 > {\large What is synthesis?}
\item < 2-| alert@2 > {\Large New finding or new methods (i.e. theory) as a consequence of linking two or more data sets}
\item < 3-| alert@3 > {\large Why do we do it? Why NOW?}
\item < 4-| alert@4 > {\Large Better understanding of complex social-ecological problems/massive amounts of data at different biological levels and spatial scales are NOW available}
\item < 5-| alert@5 > {\large How does synthesis actually work?} 
\item < 6-| alert@6 > {\Large RISKY COLLABORATIONS to reconstruct multilevel-multiscale biological systems by integrating disparate data sets and developing analytical work and simulations}
\end{itemize}
} 

%1%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\section{A Model of Synthesis}
\subsection{A Model of Synthesis 1}
\frame{\frametitle{A Model of Synthesis}
\vspace{-1 in}
\begin{itemize}
\item[]
\includegraphics<1>[width=10cm]{1.pdf} 
\end{itemize}
}
\subsection{A Model of Synthesis 2}
\frame{\animate<1-32>\frametitle{A Model of Synthesis}
\vspace{-1 in}
\begin{itemize}[<+->]
\item[] 
\includegraphics<1>[width=10cm]{1.pdf} 
\item[]
\includegraphics<2>[width=10cm]{2.pdf} 
\item[]
\includegraphics<3>[width=10cm]{3.pdf} 
\item[]
\includegraphics<4>[width=10cm]{4.pdf} 
\item[]
\includegraphics<5>[width=10cm]{5.pdf} 
\item[]
\includegraphics<6>[width=10cm]{6.pdf} 
\item[]
\includegraphics<7>[width=10cm]{7.pdf} 
\item[]
\includegraphics<8>[width=10cm]{8.pdf} 
\item[]
\includegraphics<9>[width=10cm]{9.pdf} 
\item[]
\includegraphics<10>[width=10cm]{10.pdf} 
\item[]
\includegraphics<11>[width=10cm]{11.pdf}
\item[]
\includegraphics<12>[width=10cm]{12.pdf} 
\item[]
\includegraphics<13>[width=10cm]{13.pdf} 
\item[]
\includegraphics<14>[width=10cm]{14.pdf} 
\item[]
\includegraphics<15>[width=10cm]{15.pdf} 
\item[]
\includegraphics<16>[width=10cm]{16.pdf} 
\item[]
\includegraphics<17>[width=10cm]{17.pdf} 
\item[]
\includegraphics<18>[width=10cm]{18.pdf} 
\item[]
\includegraphics<19>[width=10cm]{19.pdf} 
\item[]
\includegraphics<20>[width=10cm]{20.pdf} 
\item[]
\includegraphics<21>[width=10cm]{21.pdf} 
\item[]
\includegraphics<22>[width=10cm]{22.pdf}
\item[]
\includegraphics<23>[width=10cm]{23.pdf} 
\item[]
\includegraphics<24>[width=10cm]{24.pdf} 
\item[]
\includegraphics<25>[width=10cm]{25.pdf} 
\item[]
\includegraphics<26>[width=10cm]{26.pdf} 
\item[]
\includegraphics<27>[width=10cm]{27.pdf} 
\item[]
\includegraphics<28>[width=10cm]{28.pdf} 
\item[]
\includegraphics<29>[width=10cm]{29.pdf} 
\item[]
\includegraphics<30>[width=10cm]{30.pdf} 
\item[]
\includegraphics<31>[width=10cm]{31.pdf} 
\item[]
\includegraphics<32>[width=10cm]{32.pdf}
\end{itemize}
}

\frame{\animate<1-17>\frametitle{A Model of Synthesis}
\vspace{-1 in}
\begin{itemize}[<+->]
\item[]
\includegraphics<1>[width=10cm]{32.pdf}
\item[]
\includegraphics<2>[width=10cm]{33.pdf}
\item[]
\includegraphics<3>[width=10cm]{34.pdf} 
\item[]
\includegraphics<4>[width=10cm]{35.pdf} 
\item[]
\includegraphics<5>[width=10cm]{36.pdf} 
\item[]
\includegraphics<6>[width=10cm]{37.pdf} 
\item[]
\includegraphics<7>[width=10cm]{38.pdf} 
\item[]
\includegraphics<8>[width=10cm]{39.pdf} 
\item[]
\includegraphics<9>[width=10cm]{40.pdf}
\item[]
\includegraphics<10>[width=10cm]{41.pdf}
\item[]
\includegraphics<11>[width=10cm]{42.pdf}
\item[]
\includegraphics<12>[width=10cm]{43.pdf} 
\item[]
\includegraphics<13>[width=10cm]{44.pdf} 
\item[]
\includegraphics<14>[width=10cm]{45.pdf} 
\item[]
\includegraphics<15>[width=10cm]{46.pdf} 
\item[]
\includegraphics<16>[width=10cm]{47.pdf} 
\item[]
\includegraphics<17>[width=10cm]{48.pdf} 
\item[]
\includegraphics<18>[width=10cm]{49.pdf}
\end{itemize}
}

\subsection{A Model of Synthesis 3}
\frame{\frametitle{A Model of Synthesis}
\setbeamercolor{uppercol}{fg=black,bg=white}
\setbeamercolor{lowercol}{fg=black,bg=white}
\begin{beamerboxesrounded}[upper=upperco,lower=lowercol,shadow=true]{}
\vspace{-0.5 in}
\includegraphics[width=3.25cm]{49.pdf}
\vspace{-0.15 in}
\begin{itemize}
\item < 1-| alert@1 > {\small Asymmetry in the speed of research: Moving to the periphery is different than moving to the center or making connections among subfields/fields: new vocabulary, ideas, concepts, methods...}\\
\item < 2-| alert@2 > {\small Asymmetry in innovation: Open a new branch in the extreme vs. a new finding or new method that link two or more subfields/fields (i.e. theory) as a consequence of linking two or more data sets.}\\
\item < 3-| alert@3 > {\small Asymmetry in collaborations: Discussions with researchers from different fields using different approaches.}
\end{itemize}
\end{beamerboxesrounded}
}

\subsection{A Model of Synthesis 4}
\frame{\frametitle{Summary}
\begin{columns}
\begin{column}{6cm}
\vspace{-0.75 in}
\hspace{-0.55 in}\includegraphics[width=6.75cm]{speciation1.pdf}
\end{column}
\begin{column}{6cm}
\vspace{-0.65 in}
\hspace{-6.75}\includegraphics[width=6.75cm]{49.pdf}
\end{column}
\begin{column}{6cm}
\vspace{-0.75 in}
\hspace{-3.25 in}\includegraphics[width=6.75cm]{speciation2.pdf}
\end{column}
\end{columns}
} 

\section{Synthesis: Two Case Studies}

\subsection{Example 1}
\frame{\frametitle{Do\~nana Ecological Network}
\setbeamercolor{uppercol}{fg=black,bg=white}
\setbeamercolor{lowercol}{fg=black,bg=white}
\begin{beamerboxesrounded}[upper=upperco,lower=lowercol,shadow=true]{}
\vspace{-0.25 in}
%\begin{center}
\includegraphics[width=7.5cm,height=7cm]{Donana.pdf}
%\end{center}
\end{beamerboxesrounded}
}

\subsection{Example 2}
\frame{\frametitle{Caribbean Ecological Network}
\setbeamercolor{uppercol}{fg=black,bg=white}
\setbeamercolor{lowercol}{fg=black,bg=white}
\begin{beamerboxesrounded}[upper=upperco,lower=lowercol,shadow=true]{}
\includegraphics[width=5.5cm]{Caribbean.pdf}
\end{beamerboxesrounded}
}


\section{SEEDS/NCEAS}

\subsection{Year 1}
\frame{\frametitle{Year 1}
\begin{enumerate}
\item < 1-| alert@1 > SEEDS decide what kind of data collect or synthesize and NCEAS can provide open software, data storage, and discussion on current theories.
\item < 2-| alert@2 > You could have a theme, and then answer a simple research question using one type of data. 
\item < 3-| alert@3 > SEEDS/Mentors decide which research question and how to coordinate all the field studies/synthesis.
\item < 4-| alert@4 > NCEAS provides the context to analyze the data in different locations.
\end{enumerate}
}

\subsection{Outcomes (Year 1)}
\frame{\frametitle{Outcomes Year 1}
\begin{enumerate}
\item < 1-| alert@1 > Each year you could come up with a low cost, low time-intensive experiment or synthesized data.
\item < 2-| alert@2 > Value added by combining the same kind of data at different locations.
\item < 3-| alert@3 > New findings can emerge rather than looking at each data set separately.
\item < 4-| alert@4 > Publish summary.
\end{enumerate}
}

\frame{\frametitle{Example Idea 1}
\vspace{-1 in}
\begin{center}
\includegraphics<1>[width=10cm,angle=90]{ExampleIdea1.pdf} 
\end{center}
}

\subsection{Year 2}
\frame{\frametitle{Year 2}
\begin{enumerate}
\item < 1-| alert@1 > Different data sets in one or several locations and each dataset with its own methodology of sampling.
\item < 2-| alert@2 > That is why NCEAS was started — to move beyond just each scientist's data.
\item < 3-| alert@3 > Course or lectures organized by NCEAS emphasizing the idea of synthesis.
\end{enumerate}
}

\subsection{Outcomes (Year 2)}
\frame{\frametitle{Outcomes Year 2}
\begin{enumerate}
\item < 1-| alert@1 > Improve the concepts related with the idea of synthesis.
\item < 2-| alert@2 > Provide teachers with information on how to introduce students to the idea of synthesis.
\item < 3-| alert@3 > Discuss more in detail on how to bring together disparate things.
\end{enumerate}
}

\frame{\frametitle{Thanks!}
}

\end{document}