NCEAS Project 12069

Linking phylogenetic history, plant traits, and ecological processes at multiple scales

  • Cavender-Bares, Jeannine
  • Ackerly, David
  • Burleigh, J. Gordon
  • Mack, Michelle
  • Ree, Richard
  • Reich, Peter

ActivityDatesFurther Information
Working Group14th—18th January 2008Participant List  
Working Group18th—22nd May 2008Participant List  
Working Group17th—21st January 2009Participant List  

Abstract
We propose a series of multi-disciplinary working group meetings, sponsored jointly by NCEAS, and NESCent to investigate the links between evolutionary history, plant traits, community structure and ecosystem processes. We will use data from the Long-Term Ecological Research (LTER) network and beyond to examine the influence of phylogenetic relationships on community structure and traits relevant to ecosystem processes, at nested spatial and taxonomic scales across North America. In doing so, we will break new theoretical ground and develop new experimental and statistical protocols. Despite growing interest in understanding the influences of phylogeny on ecological processes, a synthesis across local and continental scales has yet to be attempted. Progress toward a unified understanding of the problem has been hampered by a lack of synthesis of existing phylogenetic and ecological data. A signature outcome will be a database of phylogenetic information for North American land plants and corresponding databases of plant traits and species abundances across local and large-scale environmental gradients. A second outcome will be a set of user-friendly software tools for statistical analysis of these data. These products will be used to clarify the significance of phylogenetic history and trait evolution for community organization and ecosystem processes across critical local and continental environmental gradients in North America. A North American synthesis will provide a framework for subsequent global analyses. We propose two NCEAS and two NESCent meetings between 2007 ? 09, bringing together physiological, community and ecosystem ecologists with plant systematists and computational biologists to develop new theory and statistical methods widely applicable to the study of the evolution and assembly of communities.

TypeProducts of NCEAS Research
Publication Cavender-Bares, Jeannine M.; Kozak, Kenneth H.; Fine, Paul; Kembel, Steven W. 2009. The merging of community ecology and phylogenetic biology. Ecology Letters. Vol: 12. Pages 693-6715.
Publication Webb, Campbell O.; Ackerly, David D.; Kembel, Steven W. 2008. Phylocom: Software for the analysis of phylogenetic community structure and trait evolution. Bioinformatics Applications Note. Vol: 24. Pages 2098-2100.
Data Set Reeves, Rick. 2008. USA Bailey's Ecoregions polygon map and R script for grid sampling. (Online version)
Meeting or Workshop Cavender-Bares, Jeannine M. 2007. Linking plant traits, phylogenetic history, and environmental gradients at multiple scales. Long Term Ecological Research workshop and LTER working group, May 2007, University of Minnesota, and Oct 2007, Harvard Forest. (Online version)
Meeting or Workshop Cavender-Bares, Jeannine M. 2007. Linking plant traits, phylogenetic history, and environmental gradients at multiple scales. Long Term Ecological Research workshop and LTER working group, May October 2007.
Presentation Cavender-Bares, Jeannine M. 2007. Comparative methods. Comparative Methods, 16 April 2007, Harvard University, Department of Organismal and Evolutionary Biology.
Presentation Cavender-Bares, Jeannine M. 2007. Linking phylogenetic history, plant traits and environmental gradients in time and space. Ecology and Evolution seminar series, November 2007, UC Davis.
Presentation Cavender-Bares, Jeannine M. 2007. Linking plant traits and ecophylogenetics. NSF-Sponsored Research Coordination Network, December 2007. New York.
Presentation Cavender-Bares, Jeannine M. 2008. Linking phylogenetic history, plant traits and environmental gradients in time and space. Barbara McClintock Distinguished Lecture, 2008, Cornell University.
Presentation Cavender-Bares, Jeannine M. 2008. Linking phylogenetic history, plant traits and environmental gradients in time and space. NCEAS-UCSB seminar series, May 2008. Santa Barbara.
Proposal Cavender-Bares, Jeannine M. Encyclopedia of life: Workshop to train students in "megaphylogeny" assembly.
Proposal Cavender-Bares, Jeannine M. Long term ecological research workshop and working group.
Software Cavender-Bares, Jeannine M.; Lehman, Clarence L. EcoPhyl; C- based program, open source, for ecophylogenetic analysis of community data using relatedness of species, traits, and environmental gradients. (Online version)
Software Kembel, Steven W.; Ackerly, David D.; Blomberg, Simon; Cowan, Peter; Helmus, Matthew R.; Webb, Campbell O. 2008. Picante: Tools for integrating phylogenies and ecology, R package, version 0.4-0.
Software Ree, Richard H. Phylografter: Collaborative web-based software for phylogenetic tree assembly. (Online version)
Software Webb, Campbell O.; Ackerly, David D.; Kembel, Steven W. 2008. Phylocom: Software for the analysis of phylogenetic community structure and trait evolution. Bioinformatics Applications Note. Vol: 18. Pages 2098-2100. (Online version)
Software R scripts for data analysis. (Online version)
Student Training Ree, Richard H.; Cavender-Bares, Jeannine M. 2008. "Encyclopedia of Life" meeting to train students in "megaphylogeny" assembly, April 18-20, 2008. Funded by Encyclopedia of Life, held at the Field Museum of Natural History.
Student Training Ph.D. training: Nicholas Deacon. PBS, U. Minnesota and Jeremy Beaulieu, EEB, Yale.